About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77108596_77118425_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
77108596 - 77118425

Intron Length:
9830

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGT|GTATGTATC

5'SS Class:
major

3'SS Sequence:
CTTTGCCTTGTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTGAAT

U12 Branch Point Sequence:
ACTTCACTGACT

Flanking Amino Acid:
DKAWKDYETKVTKIEKEKKE

Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.8
0.44
1.1
70.9
39.3

Major BPS
74.6
0.61
1.4
84
34.5

Major PPT
79.4
0.66
0.8
73.7
31.3

Minor 5ss
48.4
-0.1
2.5
63.7
40.8

Minor BPS
53.8
0.2
2
75.77
40.6

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

77079286 - 77136406
57121

77079286 - 77136406
57121