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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77118476_77119506_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77118476 - 77119506
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTTTTTGACA
Flanking Amino Acid:
LKGDLKGVKGDLKKPFDKAW
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
76.7
34.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82
0.72
1
79.9
37.7
Minor 5ss
49.4
-0
2.4
57.9
46.7
Minor BPS
72.3
0.7
1.1
77.15
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047999
77079286 - 77136406
57121
ENSAPLT00000006919
77079286 - 77136406
57121