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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77119582_77128899_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77119582 - 77128899
Intron Length:
9318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATATATTAAAT
Flanking Amino Acid:
KELTALFKNLIQNMNNIITF
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.2
0.7
0.9
76.3
36.9
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
53.3
0.18
1.7
71.14
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047999
77079286 - 77136406
57121
ENSAPLT00000006919
77079286 - 77136406
57121