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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77129046_77131728_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77129046 - 77131728
Intron Length:
2683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TATCCTCTTACT
Flanking Amino Acid:
SVKAINLSGLAHVENEEQYT
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
69.2
0.48
1
61
37.1
Major PPT
73.6
0.53
1
74.5
34
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
51.6
0.13
2
75.61
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006919
77079286 - 77136406
57121
ENSAPLT00000047999
77079286 - 77136406
57121