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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77218165_77227573_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77218165 - 77227573
Intron Length:
9409

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACT|GCAAGTGCA
5'SS Class:
major
3'SS Sequence:
CTCTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATA
Flanking Amino Acid:
MTRGSYFTVNFVVCQLFA
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.5
71.9
36.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.9
0.76
0.8
79.7
31.4
Minor 5ss
25.6
-2.8
4
42.4
44.3
Minor BPS
65.9
0.5
1.6
74.52
37.4

Associated Gene:

Gene:
MBOAT2
Ensembl Gene ID:
ENSAPLG00000015705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039037
77218141 - 77297718
79578