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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77219883_77227573_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77219883 - 77227573
Intron Length:
7691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATA
Flanking Amino Acid:
MVNFVVCQLFA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
82.5
30.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.9
0.76
0.8
79.7
31.4
Minor 5ss
46.3
-0.4
2.8
64.2
42.3
Minor BPS
65.9
0.5
1.6
74.52
37.4

Associated Gene:

Gene:
MBOAT2
Ensembl Gene ID:
ENSAPLG00000015705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016408
77219880 - 77297718
77839