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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77227720_77230264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77227720 - 77230264
Intron Length:
2545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AGTCATTTATTT
Flanking Amino Acid:
GLYLALFCFGWYALHFVIQS
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
48.5
-0
1.7
65.64
39

Associated Gene:

Gene:
MBOAT2
Ensembl Gene ID:
ENSAPLG00000015705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039037
77218141 - 77297718
79578
ENSAPLT00000016408
77219880 - 77297718
77839