About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77289121_77293975_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77289121 - 77293975
Intron Length:
4855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
WNIQTALWLKRVCYERATFS
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.3
0.59
0.9
77.4
36.6
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
MBOAT2
Ensembl Gene ID:
ENSAPLG00000015705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039037
77218141 - 77297718
79578
ENSAPLT00000016408
77219880 - 77297718
77839