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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77296912_77297495_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77296912 - 77297495
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
LSVKPSLTFYSSCYFCLHIA
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83
0.74
0.8
81.5
35.9
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
MBOAT2
Ensembl Gene ID:
ENSAPLG00000015705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039037
77218141 - 77297718
79578
ENSAPLT00000016408
77219880 - 77297718
77839