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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77320793_77322248_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77320793 - 77322248
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTCACTTAAAT
Flanking Amino Acid:
KGANCNLEDADNWTALISAA
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
82.3
37.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.4
0.73
0.7
80.8
30.9
Minor 5ss
41.1
-1
3.1
60.5
44
Minor BPS
65.2
0.56
1.6
81.39
39

Associated Gene:

Gene:
KIDINS220
Ensembl Gene ID:
ENSAPLG00000015856
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026916
77316302 - 77379900
63599
ENSAPLT00000025509
77316302 - 77379900
63599
ENSAPLT00000023465
77316302 - 77379900
63599
ENSAPLT00000048093
77313161 - 77379900
66740
ENSAPLT00000016591
77313161 - 77379900
66740
ENSAPLT00000032974
77316302 - 77379900
63599