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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77331322_77332557_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77331322 - 77332557
Intron Length:
1236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTAACATTAATT
Flanking Amino Acid:
GKSFLLKKLEDEMKTFAGQQ
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
83.1
0.74
0.7
81.2
30.8
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
68.1
0.65
1.6
83.31
37.2

Associated Gene:

Gene:
KIDINS220
Ensembl Gene ID:
ENSAPLG00000015856
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016591
77313161 - 77379900
66740
ENSAPLT00000032974
77316302 - 77379900
63599
ENSAPLT00000026916
77316302 - 77379900
63599
ENSAPLT00000025509
77316302 - 77379900
63599
ENSAPLT00000023465
77316302 - 77379900
63599
ENSAPLT00000048093
77313161 - 77379900
66740