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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77332738_77333070_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77332738 - 77333070
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CTTTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGATTTTGACT
Flanking Amino Acid:
SLLAVLYIFFTVIYFGGRRE
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.6
0.91
0.7
89.1
25.9
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
60.2
0.4
1.3
71.65
39.6

Associated Gene:

Gene:
KIDINS220
Ensembl Gene ID:
ENSAPLG00000015856
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026916
77316302 - 77379900
63599
ENSAPLT00000025509
77316302 - 77379900
63599
ENSAPLT00000023465
77316302 - 77379900
63599
ENSAPLT00000048093
77313161 - 77379900
66740
ENSAPLT00000016591
77313161 - 77379900
66740
ENSAPLT00000032974
77316302 - 77379900
63599