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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77361394_77366286_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77361394 - 77366286
Intron Length:
4893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAATAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTGTTACAT
Flanking Amino Acid:
TGPQHPFYNRPFFAPYLYMP
Intron Amino Acid Position:
1141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.3
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.6
84.5
23.5
Minor 5ss
36.3
-1.6
2.9
42.5
44.5
Minor BPS
50.9
0.11
2.4
80.39
41.7

Associated Gene:

Gene:
KIDINS220
Ensembl Gene ID:
ENSAPLG00000015856
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016591
77313161 - 77379900
66740
ENSAPLT00000048093
77313161 - 77379900
66740
ENSAPLT00000032974
77316302 - 77379900
63599
ENSAPLT00000026916
77316302 - 77379900
63599