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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77361394_77371179_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77361394 - 77371179
Intron Length:
9786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAATAAT
5'SS Class:
major
3'SS Sequence:
TTCCTCCTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCTCCTCAAAG
Flanking Amino Acid:
TGPQHPFYNRPCKSGLNRQR
Intron Amino Acid Position:
1141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.3
34.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69.8
0.45
1
70.5
27.9
Minor 5ss
36.3
-1.6
2.9
42.5
44.5
Minor BPS
57.1
0.08
1.8
60.81
46.6

Associated Gene:

Gene:
KIDINS220
Ensembl Gene ID:
ENSAPLG00000015856
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025509
77316302 - 77379900
63599