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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77374446_77376202_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77374446 - 77376202
Intron Length:
1757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGCT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTACTTTTATT
Flanking Amino Acid:
LPQYSATIRKANINGRVLAQ
Intron Amino Acid Position:
1246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
71.5
38.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
47
-0.3
2.9
68.1
42.9
Minor BPS
66.6
0.6
1.6
84.49
36.1

Associated Gene:

Gene:
KIDINS220
Ensembl Gene ID:
ENSAPLG00000015856
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016591
77313161 - 77379900
66740
ENSAPLT00000032974
77316302 - 77379900
63599
ENSAPLT00000026916
77316302 - 77379900
63599
ENSAPLT00000025509
77316302 - 77379900
63599
ENSAPLT00000023465
77316302 - 77379900
63599
ENSAPLT00000048093
77313161 - 77379900
66740