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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77377659_77379172_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77377659 - 77379172
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATATAACTATTC
Flanking Amino Acid:
PPRHSNLSWQSQTRRTPSLS
Intron Amino Acid Position:
1362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87
0.83
0.7
80.6
31.4
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
40.6
-0.7
2.1
53.05
37.8

Associated Gene:

Gene:
KIDINS220
Ensembl Gene ID:
ENSAPLG00000015856
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016591
77313161 - 77379900
66740
ENSAPLT00000032974
77316302 - 77379900
63599
ENSAPLT00000026916
77316302 - 77379900
63599
ENSAPLT00000025509
77316302 - 77379900
63599
ENSAPLT00000023465
77316302 - 77379900
63599
ENSAPLT00000048093
77313161 - 77379900
66740