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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77400112_77400228_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77400112 - 77400228
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
TGCTCTCTCCCT
Flanking Amino Acid:
NTDISILSLQAAEFPSELMS
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
36
-0.9
3.6
64.66
45.9

Associated Gene:

Gene:
ID2
Ensembl Gene ID:
ENSAPLG00000020880
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033759
77398643 - 77401152
2510