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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77441317_77444634_F

Intron Information:

Intron Rank:
125584
Intron Class:
major
Intron Phase:
Intron Coordinates:
77441317 - 77444634
Intron Length:
3318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
TCTTCTTCTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
75.5
0.57
0.8
70
35.6
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
57
0.2
1.9
70.67
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026023
77426436 - 77444717
18282