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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77441317_77452137_F

Intron Information:

Intron Rank:
125585
Intron Class:
major
Intron Phase:
Intron Coordinates:
77441317 - 77452137
Intron Length:
10821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATTTCCTCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
82.4
0.73
0.7
80.8
24.4
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
64
0.52
1.8
83
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036046
77440137 - 77452841
12705