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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77459142_77462811_F

Intron Information:

Intron Rank:
127693
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
77459142 - 77462811
Intron Length:
3670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCCATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
73.2
38.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.6
0.69
0.8
78.3
29.3
Minor 5ss
71
0.71
2.2
78.5
38.4
Minor BPS
49
0
2
76.74
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018852
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048493
77458481 - 77463631
5151
ENSAPLT00000046194
77458879 - 77463631
4753