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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77464648_77465420_F

Intron Information:

Intron Rank:
127690
Intron Class:
major
Intron Phase:
Intron Coordinates:
77464648 - 77465420
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAT
U12 Branch Point Sequence:
ATGGTCATGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
69.7
0.49
1.3
71.4
45.1
Major PPT
83
0.74
0.8
77.3
31
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
50.4
0.09
1.7
69.54
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018852
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032375
77463501 - 77465538
2038
ENSAPLT00000021981
77458481 - 77465538
7058