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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77469734_77525471_F

Intron Information:

Intron Rank:
124014
Intron Class:
major
Intron Phase:
Intron Coordinates:
77469734 - 77525471
Intron Length:
55738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAGATG
5'SS Class:
major
3'SS Sequence:
ATTTGATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.7
44.4
Major BPS
100
1.24
0.5
100
0
Major PPT
76.4
0.59
0.9
69.5
40.2
Minor 5ss
34.8
-1.7
3.3
39.8
46
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044989
77469639 - 77531056
61418