About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7748005_7748187_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
7748005 - 7748187

Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTATGTCGG

5'SS Class:
major

3'SS Sequence:
TTCACTTTAAAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCAAAA

U12 Branch Point Sequence:
TTCACTTTAAAA

Flanking Amino Acid:
NAANLKGKGEGFGSCRSSDP

Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.3
0.57
1.1
56.2
48.1

Major BPS
68.1
0.45
1
73.5
28.6

Major PPT
65.5
0.35
1.1
67.6
36.8

Minor 5ss
39.3
-1.2
2.7
41.1
45.2

Minor BPS
67.1
0.53
1.4
73.22
38.6

Associated Gene:

Gene:
SSTR4

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7746247 - 7748666
2420