About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77486542_77487376_R

Intron Information:

Intron Rank:
129756
Intron Class:
major
Intron Phase:
Intron Coordinates:
77486542 - 77487376
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACTCGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66
39.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
29.9
-2.3
3.8
46.5
48.8
Minor BPS
49
-0.1
2
59.77
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016996
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027087
77479592 - 77487436
7845