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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77486542_77491446_R

Intron Information:

Intron Rank:
129758
Intron Class:
major
Intron Phase:
Intron Coordinates:
77486542 - 77491446
Intron Length:
4905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACTCGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
69
41.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
33.2
-1.9
3.4
48.6
47.1
Minor BPS
49
-0.1
2
59.77
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016996
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047898
77479592 - 77492169
12578