Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77513795_77525471_F

Intron Information:

Intron Rank:

124013

Intron Class:

major

Intron Phase:

Intron Coordinates:

77513795 - 77525471

Intron Length:

11677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

ATTTGATTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTTTTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

78.8

35.5

Major BPS

100

1.24

0.5

100

Major PPT

76.4

0.59

0.9

69.5

40.2

Minor 5ss

34.9

-1.7

3.2

42.4

44.3

Minor BPS

67.5

0.63

1.7

86.64

33.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016850

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044315

77513301 - 77526850

13550