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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77531418_77543439_F

Intron Information:

Intron Rank:
129171
Intron Class:
major
Intron Phase:
Intron Coordinates:
77531418 - 77543439
Intron Length:
12022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87
0.83
0.7
81.2
30.2
Minor 5ss
34.5
-1.8
3.5
47.3
48.3
Minor BPS
74.7
0.85
1.4
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044546
77531190 - 77545031
13842