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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77544943_77555495_F

Intron Information:

Intron Rank:
129168
Intron Class:
major
Intron Phase:
Intron Coordinates:
77544943 - 77555495
Intron Length:
10553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTACCAGCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
81.3
0.7
0.8
72.4
37.8
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
38
-0.9
2.2
48.84
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019709
77544859 - 77556725
11867