About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77544943_77590651_F

Intron Information:

Intron Rank:
129170
Intron Class:
major
Intron Phase:
Intron Coordinates:
77544943 - 77590651
Intron Length:
45709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TGTCCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
81
0.7
0.8
75.6
32.9
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
62.3
0.38
1.7
73.5
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040320
77543340 - 77590945
47606