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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77655102_77655468_R

Intron Information:

Intron Rank:
149499
Intron Class:
major
Intron Phase:
Intron Coordinates:
77655102 - 77655468
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGATCTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
65.1
0.47
1.7
72.84
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020303
77650655 - 77664154
13500