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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77655692_77663947_R

Intron Information:

Intron Rank:
149500
Intron Class:
major
Intron Phase:
Intron Coordinates:
77655692 - 77663947
Intron Length:
8256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCCTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.6
0.71
0.8
73.8
36.8
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
75.8
0.89
1.2
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027939
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020303
77650655 - 77664154
13500