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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77669840_77716886_F

Intron Information:

Intron Rank:
136236
Intron Class:
major
Intron Phase:
Intron Coordinates:
77669840 - 77716886
Intron Length:
47047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
GATACTTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
77.6
0.62
0.8
76.6
32
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
48.6
-0.1
1.8
58.17
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023636
77666894 - 77717658
50765