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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77717039_77798685_F

Intron Information:

Intron Rank:
136234
Intron Class:
major
Intron Phase:
Intron Coordinates:
77717039 - 77798685
Intron Length:
81647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTACCTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
86.9
0.83
0.8
84.7
35.8
Minor 5ss
33.8
-1.8
2.9
43.3
43.9
Minor BPS
53.7
0.2
1.9
74.69
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023405
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022424
77716565 - 77799153
82589