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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77757480_77786713_R

Intron Information:

Intron Rank:
148160
Intron Class:
major
Intron Phase:
Intron Coordinates:
77757480 - 77786713
Intron Length:
29234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.1
0.72
0.8
73.1
37.3
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
59
0.36
1.9
79.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027004
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031145
77756818 - 77786820
30003