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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77802241_77803900_R

Intron Information:

Intron Rank:
148154
Intron Class:
major
Intron Phase:
Intron Coordinates:
77802241 - 77803900
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GGTTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.7
0.53
1
69.7
40.3
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
78.9
0.98
1.1
85.45
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027004
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021346
77801891 - 77813334
11444