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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77804018_77804391_R

Intron Information:

Intron Rank:
148152
Intron Class:
major
Intron Phase:
Intron Coordinates:
77804018 - 77804391
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CTAACTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
76.2
39.9
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
81.6
0.71
0.8
77.3
31.5
Minor 5ss
41.8
-0.9
3.2
57.8
46.8
Minor BPS
52
0.14
1.6
67.95
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027004
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021346
77801891 - 77813334
11444
ENSAPLT00000019937
77798379 - 77813334
14956
ENSAPLT00000024344
77786141 - 77805031
18891