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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77844378_77844856_F

Intron Information:

Intron Rank:
125091
Intron Class:
major
Intron Phase:
Intron Coordinates:
77844378 - 77844856
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTATGTGAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
66.1
0.36
1.7
80
32
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
44.4
-0.3
2.3
69.05
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017365
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048043
77844145 - 77848198
4054