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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77845007_77847270_F

Intron Information:

Intron Rank:
125092
Intron Class:
major
Intron Phase:
Intron Coordinates:
77845007 - 77847270
Intron Length:
2264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTCACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTTTCCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
86.9
30.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
70.2
0.46
0.9
65.7
35
Minor 5ss
39.9
-1.1
3.1
56.9
47.4
Minor BPS
71.4
0.65
1.6
77.93
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017365
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048043
77844145 - 77848198
4054