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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77883945_77894970_F

Intron Information:

Intron Rank:
141186
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
77883945 - 77894970
Intron Length:
11026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTACTGGAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTACTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
50.7
0.02
1.2
52.2
40.7
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
77
0.93
1.4
92.26
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026032
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036112
77883900 - 77932752
48853
ENSAPLT00000023328
77883900 - 77922076
38177