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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77883945_77906649_F

Intron Information:

Intron Rank:
141189
Intron Class:
major
Intron Phase:
Intron Coordinates:
77883945 - 77906649
Intron Length:
22705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
CCATGTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGACCCTGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
77.5
0.62
0.9
68.4
41.9
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
51
0.01
1.8
63.02
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026032
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026114
77883900 - 77922076
38177