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Intron Name: Anas_platyrhynchos_platyrhynchos_3_7790013_7790552_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7790013 - 7790552

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

CTTGCCTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCAAAC

U12 Branch Point Sequence:

CTTGCCTCCACA

Flanking Amino Acid:

DWSNYYGEPESYSSVSNMNA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

-0.1

50.5

30.4

Major PPT

75.2

0.57

0.8

68.5

31.9

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

49.9

-0

2.1

67.11

45.4

Associated Gene:

Gene:

FOXA2

Ensembl Gene ID:

ENSAPLG00000024325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031095

7788954 - 7791815

2862

ENSAPLT00000020511

7789926 - 7794068

4143