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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77907522_77921968_F

Intron Information:

Intron Rank:
141188
Intron Class:
major
Intron Phase:
Intron Coordinates:
77907522 - 77921968
Intron Length:
14447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
ATTGTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
67.1
40
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.5
0.75
0.8
76.8
36.8
Minor 5ss
35.5
-1.6
3
42
44.5
Minor BPS
60
0.39
1.9
82.31
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026032
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036112
77883900 - 77932752
48853
ENSAPLT00000026114
77883900 - 77922076
38177
ENSAPLT00000023328
77883900 - 77922076
38177