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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77922013_77923066_F

Intron Information:

Intron Rank:
141191
Intron Class:
major
Intron Phase:
Intron Coordinates:
77922013 - 77923066
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026032
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029877
77921863 - 77923270
1408