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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77940689_77940841_F

Intron Information:

Intron Rank:
143407
Intron Class:
major
Intron Phase:
Intron Coordinates:
77940689 - 77940841
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
ATTTATATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGGTGCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69.4
36.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.4
0.5
0.9
66.6
38.5
Minor 5ss
34.4
-1.8
2.8
37.9
40.9
Minor BPS
53.1
0.17
2
72.26
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027264
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020595
77940562 - 77945218
4657