Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77941950_77943172_F

Intron Information:

Intron Rank:

143409

Intron Class:

major

Intron Phase:

Intron Coordinates:

77941950 - 77943172

Intron Length:

1223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAAGA

5'SS Class:

major

3'SS Sequence:

GTCCTCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TCCTCTGTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

71.7

40.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

81.3

0.7

0.8

72.6

37.6

Minor 5ss

38.4

-1.3

2.9

49.8

Minor BPS

48.1

-0.2

2.2

55.63

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027264

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020595

77940562 - 77945218

4657