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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78026088_78026335_R

Intron Information:

Intron Rank:
152578
Intron Class:
major
Intron Phase:
Intron Coordinates:
78026088 - 78026335
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCAAT
5'SS Class:
major
3'SS Sequence:
TGCTTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ACTTTCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
72.5
38.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.5
0.73
0.8
76.5
32.3
Minor 5ss
47.2
-0.3
2.6
66.1
45.1
Minor BPS
66.9
0.51
1.5
72.6
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029674
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044742
78025200 - 78026571
1372