Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78033942_78059025_R

Intron Information:

Intron Rank:

144989

Intron Class:

major

Intron Phase:

Intron Coordinates:

78033942 - 78059025

Intron Length:

25084

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTTTCT

5'SS Class:

major

3'SS Sequence:

ATATTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

AATTATTTACAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

74.5

36.6

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

87.1

0.83

0.8

85.3

34.4

Minor 5ss

41.8

-0.9

60.1

44.2

Minor BPS

49.6

0.05

1.9

69.93

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025393

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043888

78033815 - 78062329

28515

ENSAPLT00000024883

78033815 - 78059151

25337