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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78133662_78133824_R

Intron Information:

Intron Rank:
142033
Intron Class:
major
Intron Phase:
Intron Coordinates:
78133662 - 78133824
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATAATTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
81.2
0.7
0.8
74.4
36.5
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
51.2
0.12
2.1
73.93
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023733
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036813
78114812 - 78133869
19058