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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78158532_78159835_R

Intron Information:

Intron Rank:
143116
Intron Class:
major
Intron Phase:
Intron Coordinates:
78158532 - 78159835
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
CTTTCCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
69.2
0.68
1.7
85.22
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024357
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044150
78158242 - 78160682
2441