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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78190525_78193013_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78190525 - 78193013
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTTCTCTAACA
Flanking Amino Acid:
RASVIWHRTQVVGIFAGFGL
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
76.4
0.83
1.6
88.12
28.9

Associated Gene:

Gene:
RNF144A
Ensembl Gene ID:
ENSAPLG00000006187
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020767
78189553 - 78247398
57846
ENSAPLT00000006421
78189553 - 78211836
22284
ENSAPLT00000033616
78189298 - 78231953
42656